Quickdtoo, the bore mics out at approx .454 as best I can tell with my calipers. The bullit diameter is 458 or 459. Can this disparity cause the larger groups???
To answer for Tim, yes it would make a difference but more importantly, I do not think you have measured correctly.
The .454 dia is the old dia for the 45COLT round it was reduced to .452 and standardized many years back, You say you have a 45-70, this uses a .458 dia bullet. (Jacketed) As Tim suggested, generally a couple thousands up when using lead for a dia of .459 - .460.
Also 960fps is a mighty slow velocity, step it up a bit to the 11-1200 range. I have never used trail Boss my self, my favorite for light 45-70 loads 5744. Its also a bulky powder then better fills large cases for light loads.
Back to you seating problem, Only open /flair the case mouth enough to keep the bullets from shaving lead when seating. Back that stem out a bunch!! You may need to sacrifice a couple cases to get this correct. But it is IMPORTANT!!
CW