Is your JDJ barrel also a carbine barrel? Are you using the same buttstock for both barrels? It sounds to me like maybe with the 7-30 carbine barrel, that you are now using a buttstock, where you were using a handgun grip before with the JDJ? I suspect that the problem you are describing is due to the bolt being too long that you are using to mount the buttstock to the frame. It sounds like the classic problem of the bolt is bottoming out and not letting the hammer travel fully to the frame face.
If you do nothing else but simply take the buttstock off of the frame, does the hammer then go forward all the way with the 7-30 waters carbine barrel mounted on the frame?
If this is a "Yes", then you only need to add a couple of washers under the head of the bolt that you are using to mount the buttstock onto the frame.
This problem does arise from time to time.