Tom H.: If you have extra C-96 Mauser top ends around you are a lucky feller - very few of those exist.
I think if I was going to do what you are thinking of I would rather chamber a top end for a 9x23mm case - I think that is what the 9mm Export round case length was, the same as the 9mm Largo, 9mm Bergmann-Bayard, 9mm Steyer. And you wouldn't have to deal with the possibility of a 38 Super semi-rimmed case not exactly fitting the bolt head. There are lots of 9x23 new cases available for reloading and they are the proper size - all you would have to do is take care in reloading them to pressures acceptable to that old Broomhandle.
You are absolutely correct about some of that CZ made 7.62x25mm ammo, some is way overpowered for the Broomhandle. However, the new S&B ammo in 7.62x25mm compares directly to the original 30 Mauser loads - the Mauser loading was an 88 gn bullet at 1400'/sec from the Bolo Mauser, the 7.62x25mm S&B Tokarev ammo is an 85 gn bullet at the same velocity. However, all that being said, Ron Reed one of our sponsors has 13 different loads for the 7.62x25mm and I am sure that after consultation with Ron you could find one of his 7.62x25mm loads that would be just perfect for your C-96. He might even be able to recommend a load for the 9mm Export/38 Super size round you are thinking of. HTH. Mikey.