So, twocan...when you fire off those primers in the empty brass, is the primer sticking out the back of the case afterwards? Everyone I've ever done this on backs the primer out - it can push the shoulder of your brass back after doing it a few times. I think that's why you've done it a couple times & then get misfires.
I've checked lots of fired brass in my barrel & if it's the least bit short, I've opened the neck up some using different pistol caliber neck expander dies (.38 spl). Just like making a false shoulder, size it back down with your 7.62x39 die until it just drops, then lock the ring!!
Also, you can seat the primers too deep in the brass, just seat them in firm until they are flush.
I've also switched to cast lead - one heck of an efficent cartridge. I can actually seat the slug out to touch (or just short) of the rifling. My 311407 cast slug (180gr GC) can be loaded up to 1880 fps - faster, but the accuracy went south.
So far with these steps, I've been 100% first hammer hit reliable.